a-box-ade aaur aaur_0050 aaur_2567 aaur_3503 aaur_4078 aave_3430 aave_3515 abc1167 abc3918 abfr abgr abh abiei abrb accb aciad1897 aciad3613 acnr acor acrr ada adaa adcr ader adhr adiy adpa adur afrr agar agar2 aglr agra agur aha_3778 ahrc aidb alar alas algq algr algr3 algr4 algu algw algz allr alls alsr amir_6997 ampr amrz amtr anr ansr aour apha aphb appy arac araq arar arca arcr arfm argp argr arnr arsr arsr1 arsr2 arsr3 arth_2426 arth_3541 as-yont ascg aser asnc atoc atu2740 atu3908 atu5239 atzr azl_a08610 azlb azrr

bacova_03038 baer bamb_1959 bamb_2736 bamb_3558 bamb_4155 bamb_4265 bamb_5788 bamb_6386 basr bav2320 bav2585 bav2922 bbta_7471 bc0230 bc2903 bc3039 bc5402 bcav_0044 bcav_0107 bcav_0410 bcep1808_4966 bcep18194_a4479 bcep18194_b0628 bcer bdp_1267 bdp_2071 bdp_2100 bdp_2111 beti bexr bfrr bgar bglr bglr bglr1 bglr2 bglr3 bglz bgrt1 bgrt2 bgrt3 bgrt4 bgrt5 bgrt6 bgrt7 bgrt8 bh0651 bh1250 bh1516 bh1940 bigr bioq bior bira bkdr bl0176 bl0185 bl0610 bla_0143 bla_0357 blai bldd bll2166 bll4368 blon_0374 blr3394 blr6977 bltr blur bmrr bola bpet3002 bpet3338 bpet4349 bphy_2245 bphy_4252 bphy_4590 bphy_6994 bpro_5109 bpro_5165 bpsl1086 bpsl1304 bpss0970 bpss1200 bqsr bqss brer brlr bsda btr btsr busr bxe_a4302 bxe_b1375

cadc cadr cadr-pbrr cagg_1084 cagg_3094 caif calr catr caur_1157 caur_1779 caur_3401 caur_3448 caur_3587 caur_3866 cbei_4343 cbl cbo1205 cbrb cby_0654 cc1627 ccer (gapr) ccmr ccpa ccpb ccpc ccpn cd0652 cd1503 ce2218 cecr celq celr celr2 celr3 cg0019 cg0051 cg0454 cg0500 cg0702 cg0979 cg0993 cg1032 cg1053 cg1143 cg1211 cg1308 cg1831 cg1846 cg2268 cg2500 cg2894 cg2942 cg2965 cg3082 cg3239 cg3261 cg3388 cggr chbr chir chra chvi chvl ciar cifr citb citr citt cja_0601 cja_1242 cja_2253 clcr cldr clgr clobol_00921 clp cmbr cmer cobalamin cody colr coma comk comn comr comz cooa copg copr cosr covr cpin_2755 cpin_4623 cpin_4810 cpin_6695 cps_0449 cps_3393 cps_4612 cpxr cra creb crp csac_2166 csac_2497 csal_1101 csal_1739 csal_3199 csal_3216 cscr csgd csir csor cspa csra cssr ctp-box ctra ctsr cuer cuer2 cusr cv1517 cv4096 cymr cynr cysb cysl cysr cytr czcr1 czcr2 czra

daci_0288 daci_0595 daci_1890 daci_3053 daci_3836 daci_4286 daro_1932 dasr dbac_0104 dbac_0377 dbac_1936 dbac_2821 dctr dcur dde_1200 ddes_0528, despig_03026 ddes_1264 ddes_1827 degu deor desal_0038 desal_0494 desal_2066 desal_2919 desal_3745 despig_02495 desr dest dgor dhar dica dinj-yafq dmr_17410 dmr_39480 dmr_45340 dnaa dnr dosr dpia dr2501 dsdc dtxr dvmf_1479 dvmf_1708 dvmf_1994 dvmf_2930 dvu0030 dvu0057 dvu0110 dvu0118 dvu0151 dvu0309 dvu0379 dvu0436 dvu0525 dvu0539/dvu0946 dvu0569 dvu0619 dvu0621 dvu0744 dvu0804 dvu1063 dvu1156 dvu1419 dvu1760 dvu1964/dvu1967 dvu2086 dvu2106 dvu2114 dvu2275 dvu2359 dvu2394 dvu2423 dvu2644 dvu2802 dvu2819 dvu2827 dvu2894 dvu2934 dvu2953 dvu2956 dvu3023 dvu3111 dvu3305 dvua0057 dvua0100 dvua0143

ear ebgr eca4246 ef0117 ef1410 ef1676 eli_12480 ent638_1108 envr envy espr eutr evga expr exsa exsd exur

fabr fabr2 fabt fadp fadr fapr farr fasr fatr fdsr fear fetr fhla fhpr fis fixj fixk fjoh_4822 fleq flgm flhd-flhc flia fliz flpa flrr fmn fmn-box fnr fnrn fnrn/fixk/aadr fpvi fpvr frlr frur frur2 fsra fucr fur fura

g-box-gua g-box-hxtx gabr gabr2 gaca gacs gade gade-rcsb gadw gadx galr galr/gals gals gamr ganr garr gatr_1-gatr_2 gbem_0803 gbsr (yuac) gbur gcva gcvr gdia_0881 gemm_rna_motif gere gerr ggur glcc glcr glct glmr glms glms ribozyme glna glnl glnr glor glpp glpr glrr gltc gltc2 gltr glur glvr glvr2 glxr gly-box glycine gmur gnfm gntr gntr1 gntr2 gosr gosr2 gpur gudr gulr gutm gutr

h-ns h16_a0963 h16_a0970 h16_a2655 h16_b0275 h16_b1411 h16_b1468 h16_b1761 h16_b2241 hapr hbs hcar hch_03332 hcpr hdfr hdir hexr hexr1 hexr2 hgtr higa higb-higa hipa-hipb hipb his_leader hisr hmcr hmgq hmgr hmgs hnoc hns hpar1 hpdr hpr hprr hpxr hpxs hrca hrpb hrpl hrpx hrra hrsm hspr hssr htcs_aga-1 htcs_ara-1 htcs_ara-2 htcs_fru htcs_hep htcs_hya htcs_man-1 htcs_man-2 htcs_man-3 htcs_ogl-1 htcs_ogl-2 htcs_pga htcs_rgu-1 htcs_rgu-2 htra hu hupa-hupb hupb hutc hutp hutr hxlr hyfr hypr hypr2 hypt

icar iclr ider idnr ihf ihfa-ihfb ilvy immr iolr iolr1 iolr2 ipi irr iscr iscr2

jann_1107 jann_1459 jann_3936 jk1423

kdgr kdpe kdpr kglr kipr kojr

l-box-lys l10_leader l13_leader l19_leader l20_leader l21_leader laci lacr lacr_0766 lar_1807 lasr lba0573 lba1472 lba1638 leu_leader leuo levr lexa lexa2 lfar lgor liar licr lict liuq liur liur2 lj1265 lldr lmo0031 lmra lndyr lp_2742 lp_3221 lrha lrp lrpa lrpc lsei_0081 lsei_0368 lsrr ltbr ltbr lutr luxo luxr lysg lysine lysr lysx lytr lytt

m-box mali malr malr1 malr1/malr2/malr3 malr2 malr3 malr4 malr5 malt manr manr1 manr2 mara marr mata maze maze-mazf mcbr mce2r mdcy mder mdtr mdxr meci med med92_15328 melr mepr merr metj metr mexr mext mexz mfla_0336 mg_sensor mgsr mhpr mhqr mifm mini-ykkc mlc mler mll0059 mll1683 mll2434 mlnr mlra mmwyl1_0258 mmwyl1_0910 mmwyl1_4437 mngr mntr moco_rna_motif mocr mode mode2 mode3 modr mogr mpra mqsa mraz msmeg_3264 msmeg_3606 msmeg_4140 msmr msmr1 mta mtar mtlr mtra mtrb muca mucb mucc mucd mur murr mvat mvfr mvta

nac nadq nadr nagc nagq nagr nagr nalc nanr nanr (siaq) narl narp natr nemr nfa20840 nfa21130 nfa3720 nfxb ngr_b22600 nhar niar nifa nifa-1 nigr nihr nikr nimr nmlr nnrr nodd1 norr norr2 nrdr nrec nrfr nrra nrtr nrtr2 nsrr nsrr nsrr2 nssr ntca ntcb ntdr ntrc nur

oapr ob2597_06045 og2516_10476 oglr2 ohcr ohrr ompr opar oryr oxyr

pa0268 pa0779 pa1520 pa2100 pa2206 pa2299 pa3697 pa5471 paar paar2 paax padr paib patl_0292 pbprb0322 pcaq pcar pchr pckr pdel pden_0318 pden_3389 pden_4836 pdhr pdxq pdxq2 pdxq3 pdxr pdxr2 pdxr2(2) pdxr3 pdxw pdxw2 pe36_10153 pedr pepa perr pfer pfl_0254 pfl_2191 pflr pgrr phca phd phhr phnf phnr phnr1 phnr2 phob phop phoq phor phr phrr phsr phzr pila pilr pipr pirr pksa pltr pmi2934 pmi3555 pmra pnur pp0486 pp2642 pp2948 pprb ppsr ppyr pqrr preq1 preq1 riboswitch preq1-ii prl90265 prpr psdr psir pspf pspto0485 pspto1352 pspto5027 psra ptd2_03046 ptsr ptxr ptxs pucr purine purr puta putr puur pvds pyer pyrr

qacr qdor qorr qseb

rafr ralta_a0216 rama ramb rata rbkr rbsr rbsr1 rbsr2 rbsr3 rbtr rcas_2304 rcas_3562 rcda rcdb rclr rcnr rcsa-rcsb rcsb rcsb-bglj rdgb rega regr rel relb relb-rele rem rer_29210 resd reut_c5892 rex rex1 rgg rha1_ro08093 rhar rhas rhgr rhir rhlr rhpr ricr ripa rira rl3595 rl4253 rmet_4647 rmet_5631 rmgr rob roca1 rocr rok rop_32700 rosr rovm roxr roxs rpir rplt rpod rpoe rpoh rpon rpos rsal rsc1790 rsfa rspr rsta rtcr rumgna_00848 rutr rutr2 rutr3 rutr4 rv0022c rv0023 rv0047c rv0067c rv0078 rv0081 rv0135c rv0195 rv0238 rv0273c rv0275c rv0302 rv0324 rv0330c rv0339c rv0465c rv0472c rv0474 rv0494 rv0576 rv0602c rv0623 rv0653c rv0674 rv0678 rv0681 rv0691c rv0757 rv0767c rv0818 rv0827c rv0880 rv1033c rv1049 rv1167c rv1176c rv1186c rv1219c rv1255c rv1287 rv1353c rv1359 rv1395 rv1404 rv1423 rv1460 rv1556 rv1674c rv1773c rv1776c rv1816 rv1846c rv1956 rv1985c rv1990c rv1994c rv2009 rv2011c rv2034 rv2069 rv2250c rv2282c rv2324 rv2595 rv2760c rv2779c rv2827c rv2912c rv3050c rv3066 rv3082c rv3095 rv3160c rv3164c rv3167c rv3173c rv3183 rv3223c rv3249c rv3260c rv3286c rv3291c rv3405c rv3414c rv3416 rv3417c rv3488 rv3557c rv3574 rv3597c rv3681c rv3736 rv3744 rv3765c rv3830c rv3833 rv3855 rv3862c rv3911

s-box-sam s15 sace_5794 sace_6121 sace_6928 sact sacy saer sag1808 sag1910 sah_riboswitch sahr sala sam sam-chlorobi sam-iv sam-sah sam_alpha samr sara sav1329 sbal_1936 sbal_3352 sbal_4072 sco1410 sco1956 sco2753 sco3812 sco4158 sco5692 scrr scrr2 scza sdar sde_0506 sde_3525 sdhr sdhr2 sdia sdpr sens serc sgar sgar2 sgrr siar siga sigb sigd sige sigf sigg sigh sigi sigk sigl sigm sigma24 sigma28 sigma32 sigma38 sigma54 sigma70 sigv sigw sigx sigy sinr sknr sll0822 sll5086 slrr slya smb20014 smb20039 smb20537 smb20667 smb20717 smb21598 smb21706 smc04260 smcr smk_box_riboswitch smlt0590 smlt1075 smor smtb so0072 so0193 so0734 so1393 so1415 so1578 so1703 so1758 so2282 so2426 so3277 so3393 so3494 so3627 so4326 so4468 so4705 socr sorc soxr soxs spef sphr spla spo0590 spo0a spoa0164 spoa0336 spoa0379 spoiiid spovt spro_0112 spro_0637 spro_1420 spro_2017 spro_3347 spro_3719 spx spy1285 sr1 srlr ssur stm1555 stpa stringent response suca sufr sugr susr susr2 susr3 susr4 sutr suxr svir_39240 swit_4344 sypg

t-box(ala) t-box(arg) t-box(asn) t-box(asp) t-box(cys) t-box(gly) t-box(his) t-box(ile) t-box(leu) t-box(lys) t-box(met) t-box(phe) t-box(pro) t-box(ser) t-box(thr) t-box(trp) t-box(tyr) t-box(val) t-box-ala t-box-arg t-box-asp t-box-cys t-box-gln t-box-gly t-box-his t-box-ile t-box-leu t-box-phe t-box-pro t-box-ser t-box-thr t-box-trp t-box-tyr t-box-val t-o2 tagr talr taur taur2 tcpp tdca tdcr tertu_3902 tha_1503 thf thi-box thir thr_leader thur tm0766 tm1030 tmcr tnra todt tola_2572 tola_2750 torr toxr toxt tpba tpp trap trar trer trer (rgra) trnd-cys trnd-ser trnd-tyr trnsl-tyr1 trp_leader trpi trpr tsrr ttdr ttrr tunr tunr2 tyrr tyrr1 tyrr2

uctr udhr ugpr ugtr uhpa uidr ular urar urer urir uvry uxar uxur uxur1 uxur2 uxur3

vanr vapar_1337 vapar_5644 vca0673 vea_000881 veis_0044 veis_4721 vf_1255 vfr vibhar_07005 vp2396 vpsr vpst vqsm vqsr vrei vsak1_09283 vsak1_25095 vsal_i1306 vsrd vv21354

wggr (expg) whce

xac0737 xac1548 xapr xcc2209 xcc4129 xltr xosr xpf xre xylr

y3436 yabj ybfi ybfp ybhl ybzh ycba ycek ycge ycgk ycjw yclj ycnc ycnk ycxd yczg ydao riboswitch ydao-yuaa ydcr ydeb ydec ydee ydef ydeo ydep ydes ydfd/yisv ydff ydfi ydfl ydgg ydgj ydhc ydih ydzf ye4144 yefm yefm-yoeb yeil yetl yeze yfhp yfir yfiv yfmp yhaj yhbi yhcf yhcf2 yhdi/ydel yhgd yiaj yihl yisr yjdr yjir yjir2 yjjq ykkc-yxkd ykok ykom ykrk ykvn ylac ylbh ymfc yoau yobd yobq yodb yodb/catr yofa yozg ypdb yplp ypop yqfl yqhc yqji yqzb yran yrdx yrdx2 yrdx3 yrdx3(2) yrkd yrkp yrzc ysia ysmb ytcd ytli ytra ytra2 ytze yufm yvan yvao yvbf/yvav yvcp yvdt yvfu yvkb yvrhb yvri yvri-yvrha ywae ywbi ywcc ywha ywoh ywqm ywrc ywzg yxdj yxer yxjo yyan yyba yybe yybp-ykoy yybr/ydep yycf

znr zntr znur zrar zur zur2