ProTReND
Organisms
Regulators
About
Organism
Regulator
Gene
Organisms available in ProTReND:
Organism Name
Acetobacter pasteurianus IFO 3283-01
Acidithiobacillus ferrooxidans ATCC 23270
Acidobacterium capsulatum ATCC 51196
Acidothermus cellulolyticus 11B
Acidovorax citrulli AAC00-1
Acidovorax sp. JS42
Acinetobacter baumannii AB0057
Acinetobacter baumannii ATCC 17978
Acinetobacter sp. ADP1
Actinobacillus pleuropneumoniae serovar 5b str. L20
Actinobacillus pleuropneumoniae serovar 7 str. AP76
Actinobacillus succinogenes 130Z
Actinosynnema mirum DSM 43827
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas salmonicida subsp. salmonicida A449
Aggregatibacter aphrophilus NJ8700
Agrobacterium fabrum str. C58
Agrobacterium tumefaciens
Alcanivorax borkumensis SK2
Aliivibrio fischeri ES114
Aliivibrio fischeri MJ11
Aliivibrio salmonicida LFI1238
Alkaliphilus oremlandii OhILAs
Alteromonadales bacterium TW-7
Alteromonas macleodii
Anoxybacillus flavithermus WK1
Archaeoglobus fulgidus DSM 4304
Archaeoglobus profundus DSM 5631
Aromatoleum aromaticum EbN1
Arthrobacter sp. FB24
Azorhizobium caulinodans ORS 571
Azospirillum sp. B510
Azotobacter vinelandii DJ
Bacillus anthracis str. Sterne
Bacillus cereus ATCC 14579
Bacillus clausii KSM-K16
Bacillus halodurans C-125
Bacillus licheniformis DSM 13 = ATCC 14580
Bacillus pumilus SAFR-032
Bacillus subtilis subsp. subtilis str. 168
Bacillus velezensis FZB42
Bacteroides cellulosilyticus DSM 14838
Bacteroides coprophilus DSM 18228 = JCM 13818
Bacteroides dorei DSM 17855
Bacteroides eggerthii DSM 20697
Bacteroides fragilis NCTC 9343
Bacteroides ovatus ATCC 8483
Bacteroides pectinophilus ATCC 43243
Bacteroides plebeius DSM 17135
Bacteroides stercoris ATCC 43183
Bacteroides thetaiotaomicron VPI-5482
Bacteroides uniformis ATCC 8492
Bacteroides vulgatus ATCC 8482
Bartonella quintana str. Toulouse
Bdellovibrio bacteriovorus HD100
Bermanella marisrubri
Beutenbergia cavernae DSM 12333
Bifidobacterium adolescentis ATCC 15703
Bifidobacterium angulatum DSM 20098 = JCM 7096
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium bifidum NCIMB 41171
Bifidobacterium breve DSM 20213 = JCM 1192
Bifidobacterium dentium Bd1
Bifidobacterium gallicum DSM 20093 = LMG 11596
Bifidobacterium longum NCC2705
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088
Blastopirellula marina DSM 3645
Blautia hansenii DSM 20583
Bordetella avium 197N
Bordetella bronchiseptica RB50
Bordetella pertussis CS
Bordetella petrii DSM 12804
Borreliella burgdorferi 297
Brachybacterium faecium DSM 4810
Bradyrhizobium diazoefficiens USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis bv. 1 str. 16M
Burkholderia ambifaria AMMD
Burkholderia glumae BGR1
Burkholderia lata
Burkholderia mallei ATCC 23344
Burkholderia pseudomallei 1026b
Burkholderia pseudomallei K96243
Burkholderia thailandensis E264
Burkholderia vietnamiensis G4
Caldanaerobacter subterraneus subsp. tengcongensis MB4
Caldicellulosiruptor bescii DSM 6725
Caldicellulosiruptor saccharolyticus DSM 8903
Campylobacter coli RM2228
Campylobacter jejuni subsp. jejuni 81-176
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Campylobacter lari RM2100
Campylobacter upsaliensis RM3195
Candidatus Protochlamydia amoebophila UWE25
Carboxydothermus hydrogenoformans Z-2901
Caulobacter segnis ATCC 21756
Caulobacter sp. K31
Caulobacter vibrioides CB15
Caulobacter vibrioides NA1000
Cellvibrio japonicus Ueda107
Chelativorans sp. BNC1
Chitinophaga pinensis DSM 2588
Chlamydia abortus S26/3
Chlamydia caviae GPIC
Chlamydia felis Fe/C-56
Chlamydia muridarum Nigg
Chlamydia pneumoniae AR39
Chlamydia pneumoniae CWL029
Chlamydia trachomatis D/UW-3/CX
Chlorobaculum parvum NCIB 8327
Chlorobium chlorochromatii CaD3
Chlorobium ferrooxidans DSM 13031
Chlorobium limicola DSM 245
Chlorobium phaeobacteroides BS1
Chlorobium phaeobacteroides DSM 266
Chlorobium phaeovibrioides DSM 265
Chloroflexus aggregans DSM 9485
Chloroflexus aurantiacus Y-400-fl
Chloroherpeton thalassium ATCC 35110
Chromobacterium violaceum ATCC 12472
Chromohalobacter salexigens DSM 3043
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium ICC168
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Clostridiales bacterium 1_7_47FAA
Clostridioides difficile 630
Clostridioides difficile R20291
Clostridium acetobutylicum ATCC 824
Clostridium beijerinckii NCIMB 8052
Clostridium bolteae ATCC BAA-613
Clostridium botulinum A str. ATCC 3502
Clostridium butyricum 5521
Clostridium hiranonis DSM 13275
Clostridium kluyveri DSM 555
Clostridium leptum DSM 753
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium scindens ATCC 35704
Clostridium sp. L2-50
Clostridium sp. SS2/1
Clostridium tetani E88
Colwellia psychrerythraea 34H
Comamonas testosteroni KF-1
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314
Corynebacterium glutamicum ATCC 13032
Corynebacterium glutamicum R
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109
Croceibacter atlanticus HTCC2559
Cupriavidus metallidurans CH34
Cupriavidus necator H16
Cupriavidus pinatubonensis JMP134
Cupriavidus taiwanensis
Cutibacterium acnes KPA171202
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8801
Cytophaga hutchinsonii ATCC 33406
Dechloromonas aromatica RCB
Dehalococcoides mccartyi 195
Deinococcus deserti VCD115
Deinococcus geothermalis DSM 11300
Deinococcus radiodurans R1
Delftia acidovorans SPH-1
Desulfohalobium retbaense DSM 5692
Desulfomicrobium baculatum DSM 4028
Desulfovibrio alaskensis G20
Desulfovibrio desulfuricans ATCC 27774
Desulfovibrio magneticus RS-1
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris str. 'Miyazaki F'
Desulfuromonas acetoxidans DSM 684
Dickeya dadantii 3937
Dorea formicigenerans ATCC 27755
Dorea longicatena DSM 13814
Dyadobacter fermentans DSM 18053
Edwardsiella tarda EIB202
Enterobacter sp. 638
Enterococcus faecalis V583
Erwinia amylovora ATCC 49946
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Escherichia coli BL21(DE3)
Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. W3110
Eubacterium eligens ATCC 27750
Eubacterium rectale ATCC 33656
Ferroglobus placidus DSM 10642
Fervidobacterium nodosum Rt17-B1
Fibrobacter succinogenes subsp. succinogenes S85
Flavobacteria bacterium BAL38
Flavobacteria bacterium BBFL7
Flavobacteriales bacterium ALC-1
Flavobacterium johnsoniae UW101
Francisella philomiragia subsp. philomiragia ATCC 25017
Francisella tularensis subsp. novicida FTE
Francisella tularensis subsp. tularensis SCHU S4
Frankia casuarinae
Frankia sp. EAN1pec
Gardnerella vaginalis 409-05
Geobacillus kaustophilus HTA426
Geobacter daltonii FRC-32
Geobacter lovleyi SZ
Geobacter metallireducens GS-15
Geobacter sp. M21
Geobacter sulfurreducens PCA
Geobacter uraniireducens Rf4
Glaciecola sp. HTCC2999
Glaesserella parasuis SH0165
Gloeobacter violaceus PCC 7421
Gluconacetobacter diazotrophicus PA1 5
Gluconobacter oxydans 621H
Gramella forsetii KT0803
Granulibacter bethesdensis CGDNIH1
Haemophilus ducreyi 35000HP
Haemophilus influenzae Rd KW20
Hahella chejuensis KCTC 2396
Haloarcula marismortui ATCC 43049
Halobacterium salinarum R1
Halobacterium sp. NRC-1
Haloferax volcanii DS2
Halomicrobium mukohataei DSM 12286
Haloquadratum walsbyi DSM 16790
Halorubrum lacusprofundi ATCC 49239
Haloterrigena turkmenica DSM 5511
Helicobacter acinonychis str. Sheeba
Helicobacter hepaticus ATCC 51449
Helicobacter mustelae 12198
Helicobacter pylori 26695
Helicobacter pylori G27
Helicobacter pylori HPAG1
Helicobacter pylori J99
Herpetosiphon aurantiacus DSM 785
Histophilus somni 2336
Hyphomonas neptunium ATCC 15444
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Intestinibacter bartlettii DSM 16795
Janibacter sp. HTCC2649
Jannaschia sp. CCS1
Jonesia denitrificans DSM 20603
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Kocuria rhizophila DC2201
Kordia algicida OT-1
Kosmotoga olearia TBF 19.5.1
Kytococcus sedentarius DSM 20547
Lachnoclostridium phytofermentans ISDg
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus casei BL23
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius UCC118
Lactococcus lactis subsp. cremoris MG1363
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. lactis Il1403
Laribacter hongkongensis HLHK9
Lawsonia intracellularis PHE/MN1-00
Leeuwenhoekiella blandensis MED217
Leifsonia xyli subsp. xyli str. CTCB07
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Leptospira interrogans serovar Lai str. 56601
Leptothrix cholodnii SP-6
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Listeria innocua Clip11262
Listeria monocytogenes 10403S
Listeria monocytogenes EGD-e
Listeria welshimeri serovar 6b str. SLCC5334
Macrococcus caseolyticus JCSC5402
Magnetococcus marinus MC-1
Magnetospirillum magneticum AMB-1
Magnetospirillum magnetotacticum MS-1
Mannheimia succiniciproducens MBEL55E
Maribacter sp. HTCC2170
Marinobacter sp. ELB17
Marinomonas sp. MWYL1
Maritimibacter alkaliphilus HTCC2654
Marvinbryantia formatexigens DSM 14469
Mesorhizobium japonicum MAFF 303099
Metallosphaera sedula DSM 5348
Methanobrevibacter ruminantium M1
Methanobrevibacter smithii ATCC 35061
Methanobrevibacter smithii DSM 2375
Methanococcoides burtonii DSM 6242
Methanocorpusculum labreanum Z
Methanoculleus marisnigri JR1
Methanohalophilus mahii DSM 5219
Methanoregula boonei 6A8
Methanosarcina acetivorans C2A
Methanosarcina barkeri str. Fusaro
Methanosarcina mazei Go1
Methanosphaera stadtmanae DSM 3091
Methanosphaerula palustris E1-9c
Methanospirillum hungatei JF-1
Methanothermobacter thermautotrophicus str. Delta H
Methanothrix thermoacetophila PT
Methylibium petroleiphilum PM1
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Microcystis aeruginosa NIES-843
Microscilla marina ATCC 23134
Moorella thermoacetica ATCC 39073
Moritella sp. PE36
Mycobacterium avium 104
Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium leprae TN
Mycobacterium marinum M
Mycobacterium sp. JLS
Mycobacterium sp. KMS
Mycobacterium tuberculosis H37Rv
Mycobacterium ulcerans Agy99
Mycobacteroides abscessus ATCC 19977
Mycolicibacterium gilvum PYR-GCK
Mycolicibacterium smegmatis MC2 155
Mycolicibacterium vanbaalenii PYR-1
Myxococcus xanthus DK 1622
Nakamurella multipartita DSM 44233
Natrialba magadii ATCC 43099
Natronomonas pharaonis DSM 2160
Neisseria gonorrhoeae FA 1090
Neisseria meningitidis MC58
Neptuniibacter caesariensis
Nitrobacter winogradskyi Nb-255
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Nocardia farcinica IFM 10152
Nocardioides sp. JS614
Nostoc sp. PCC 7120
Novosphingobium aromaticivorans DSM 12444
Oceanicaulis sp. HTCC2633
Oceanicola granulosus HTCC2516
Oceanobacillus iheyensis HTE831
Oenococcus oeni PSU-1
Paenarthrobacter aurescens TC1
Paenibacillus sp. JDR-2
Paraburkholderia phymatum STM815
Paraburkholderia xenovorans LB400
Paracoccus denitrificans PD1222
Pasteurella multocida subsp. multocida str. Pm70
Pectobacterium atrosepticum SCRI1043
Pectobacterium carotovorum subsp. carotovorum PCC21
Pediococcus pentosaceus ATCC 25745
Pedobacter heparinus DSM 2366
Pedobacter sp. BAL39
Pelobacter carbinolicus str. DSM 2380
Pelobacter propionicus DSM 2379
Pelodictyon luteolum DSM 273
Pelodictyon phaeoclathratiforme BU-1
Petrotoga mobilis SJ95
Phenylobacterium zucineum HLK1
Photobacterium angustum S14
Photobacterium profundum SS9
Photorhabdus laumondii subsp. laumondii TTO1
Picrophilus torridus DSM 9790
Pirellula staleyi DSM 6068
Planctomyces maris DSM 8797
Polaribacter irgensii 23-P
Polaribacter sp. MED152
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Prochlorococcus marinus str. MIT 9313
Prosthecochloris aestuarii DSM 271
Proteus mirabilis HI4320
Pseudarthrobacter chlorophenolicus A6
Pseudoalteromonas atlantica T6c
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2
Pseudomonas aeruginosa M18
Pseudomonas aeruginosa PA103
Pseudomonas aeruginosa PAK
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf0-1
Pseudomonas mendocina ymp
Pseudomonas protegens Pf-5
Pseudomonas putida
Pseudomonas putida DOT-T1E
Pseudomonas putida KT2440
Pseudomonas putida S16
Pseudomonas sp. ADP
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. tomato str. DC3000
Pseudooceanicola batsensis HTCC2597
Pseudothermotoga lettingae TMO
Psychrobacter arcticus 273-4
Psychrobacter sp. PRwf-1
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3
Pyrobaculum aerophilum str. IM2
Pyrobaculum arsenaticum DSM 13514
Pyrobaculum calidifontis JCM 11548
Pyrobaculum islandicum DSM 4184
Pyrobaculum neutrophilum V24Sta
Pyrococcus abyssi GE5
Pyrococcus furiosus DSM 3638
Pyrococcus horikoshii OT3
Ralstonia pickettii 12J
Ralstonia solanacearum GMI1000
Reinekea blandensis MED297
Renibacterium salmoninarum ATCC 33209
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhodobacter capsulatus SB 1003
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodococcus erythropolis PR4
Rhodococcus jostii RHA1
Rhodococcus opacus B4
Rhodoferax ferrireducens T118
Rhodopirellula baltica SH 1
Rhodopseudomonas palustris CGA009
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170
Roseburia intestinalis L1-82
Roseiflexus castenholzii DSM 13941
Roseiflexus sp. RS-1
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Ruegeria pomeroyi DSS-3
Ruegeria sp. TM1040
Ruminiclostridium cellulolyticum H10
Ruminococcus gnavus ATCC 29149
Ruminococcus lactaris ATCC 29176
Saccharolobus solfataricus P2
Saccharomonospora viridis DSM 43017
Saccharophagus degradans 2-40
Saccharopolyspora erythraea NRRL 2338
Salmonella enterica subsp. enterica serovar Typhi str. Ty2
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Serratia proteamaculans 568
Shewanella amazonensis SB2B
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella pealeana ATCC 700345
Shewanella piezotolerans WP3
Shewanella putrefaciens CN-32
Shewanella sediminis HAW-EB3
Shewanella sp. ANA-3
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. W3-18-1
Shewanella woodyi ATCC 51908
Sinorhizobium fredii NGR234
Sinorhizobium meliloti 1021
Sinorhizobium meliloti 2011
Sinorhizobium meliloti SM11
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1
Sphingopyxis alaskensis RB2256
Staphylococcus aureus subsp. aureus COL
Staphylococcus aureus subsp. aureus N315
Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus aureus subsp. aureus str. Newman
Staphylococcus capitis SK14
Staphylococcus carnosus subsp. carnosus TM300
Staphylococcus epidermidis ATCC 12228
Staphylococcus haemolyticus JCSC1435
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
Stenotrophomonas maltophilia K279a
Streptococcus agalactiae
Streptococcus agalactiae 2603V/R
Streptococcus agalactiae A909
Streptococcus agalactiae NEM316
Streptococcus cristatus AS 1.3089
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Streptococcus equi subsp. zooepidemicus MGCS10565
Streptococcus gallolyticus UCN34
Streptococcus gordonii str. Challis substr. CH1
Streptococcus intermedius JTH08
Streptococcus lutetiensis 033
Streptococcus mitis B6
Streptococcus mutans UA159
Streptococcus pneumoniae D39
Streptococcus pneumoniae R6
Streptococcus pneumoniae TIGR4
Streptococcus pyogenes HSC5
Streptococcus pyogenes M1 GAS
Streptococcus pyogenes MGAS10394
Streptococcus pyogenes MGAS10750
Streptococcus pyogenes MGAS315
Streptococcus pyogenes MGAS5005
Streptococcus pyogenes NZ131
Streptococcus salivarius 57.I
Streptococcus sanguinis SK36
Streptococcus suis 05ZYH33
Streptococcus suis P1/7
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMD-9
Streptococcus uberis 0140J
Streptomyces avermitilis MA-4680 = NBRC 14893
Streptomyces coelicolor A3(2)
Streptomyces flavovirens
Streptomyces griseus subsp. griseus NBRC 13350
Streptomyces scabiei 87.22
Sulfitobacter sp. EE-36
Sulfolobus acidocaldarius DSM 639
Sulfolobus islandicus Y.N.15.51
Sulfurisphaera tokodaii str. 7
Synechococcus elongatus PCC 7942
Synechococcus sp. JA-3-3Ab
Synechococcus sp. PCC 7002
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803
Teredinibacter turnerae T7901
Thauera sp. MZ1T
Thermoanaerobacter italicus Ab9
Thermoanaerobacter sp. X514
Thermococcus gammatolerans EJ3
Thermococcus kodakarensis KOD1
Thermococcus onnurineus NA1
Thermococcus sibiricus MM 739
Thermoplasma acidophilum DSM 1728
Thermosipho africanus TCF52B
Thermosipho melanesiensis BI429
Thermosynechococcus elongatus BP-1
Thermotoga maritima MSB8
Thermotoga naphthophila RKU-10
Thermotoga neapolitana DSM 4359
Thermotoga petrophila RKU-1
Thermotoga sp. RQ2
Thermus aquaticus Y51MC23
Thermus thermophilus HB27
Thermus thermophilus HB8
Thiobacillus denitrificans
Tolumonas auensis DSM 9187
Trichodesmium erythraeum IMS101
Tyzzerella nexilis DSM 1787
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Vibrio anguillarum 775
Vibrio campbellii ATCC BAA-1116
Vibrio cholerae MJ-1236
Vibrio cholerae O1 biovar El Tor str. N16961
Vibrio cholerae O395
Vibrio parahaemolyticus RIMD 2210633
Vibrio shilonii AK1
Vibrio tasmaniensis LGP32
Vibrio vulnificus CMCP6
Vibrio vulnificus MO6-24/O
Vibrio vulnificus YJ016
Xanthobacter autotrophicus Py2
Xanthomonas axonopodis Xac29-1
Xanthomonas campestris pv. campestris str. 8004
Xanthomonas campestris pv. campestris str. ATCC 33913
Xanthomonas campestris pv. vesicatoria str. 85-10
Xanthomonas citri pv. citri str. 306
Xanthomonas oryzae pv. oryzae KACC 10331
Xanthomonas oryzae pv. oryzae MAFF 311018
Xylella fastidiosa 9a5c
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia pestis CO92
Yersinia pestis KIM10+
Yersinia pestis biovar Microtus str. 91001
Yersinia pseudotuberculosis IP 32953
Yersinia pseudotuberculosis YPIII
Yoonia vestfoldensis SKA53
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
ProTReND 2019
Biosystems
Biosystems